Genotype data analysis UMCG-GRIAC
latest

Genome studio

  • Generate plink files

Quality control

  • Quality control overview
  • Check call rate per SNP and per sample
  • Check MAF (SNP-level)
  • Check sample heterozygosity (Sample-level)
  • Check sex discordance (Sample-level)
  • Check relatedness (Sample-level)
  • Hardy--Weinberg equilibrium (SNP level)
  • PCA (SNP level)
  • Final remarks
Genotype data analysis UMCG-GRIAC
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© Copyright 2023, Martin Banchero, Tatiana Karp. Revision 86eae3cf.

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