Genotype data analysis UMCG-GRIAC
latest
Genome studio
Generate plink files
Quality control
Quality control overview
Check call rate per SNP and per sample
Check MAF (SNP-level)
Check sample heterozygosity (Sample-level)
Check sex discordance (Sample-level)
Check relatedness (Sample-level)
Hardy--Weinberg equilibrium (SNP level)
PCA (SNP level)
Final remarks
Genotype data analysis UMCG-GRIAC
Index
Edit on GitHub
Index